try to suppress messages and add timing information (#495)

* try to suppress messages and add timing information

* Update documentation

---------

Co-authored-by: danielnachun <danielnachun@users.noreply.github.com>

Author: danielnachun

.github/recipe/recipe.yaml

@@ -69,6 +69,7 @@ requirements:
     - r-stringr
     - r-susier
     - r-tibble
+    - r-tictoc
     - r-tidyr
     - r-vctrs
     - r-vroom
@@ -115,6 +116,7 @@ requirements:
     - r-stringr
     - r-susier
     - r-tibble
+    - r-tictoc
     - r-tidyr
     - r-vctrs
     - r-vroom

.gitignore

@@ -11,3 +11,4 @@ pecotmr.Rproj
 /.pixi
 docs
 .claude
+dev

DESCRIPTION

@@ -33,6 +33,7 @@ Imports:
     stringr,
     susieR,
     tibble,
+    tictoc,
     tidyr,
     vctrs,
     vroom

NAMESPACE

@@ -229,6 +229,8 @@ importFrom(susieR,susie_rss)
 importFrom(susieR,univariate_regression)
 importFrom(tibble,as_tibble)
 importFrom(tibble,tibble)
+importFrom(tictoc,tic)
+importFrom(tictoc,toc)
 importFrom(tidyr,replace_na)
 importFrom(tidyr,separate)
 importFrom(tools,file_path_sans_ext)

R/twas_weights.R

@@ -88,6 +88,7 @@ r45 = {features = ["r45"]}
 "r-stringr" = "*"
 "r-susier" = "*"
 "r-tibble" = "*"
+"r-tictoc" = "*"
 "r-tidyr" = "*"
 "r-vctrs" = "*"
 "r-vroom" = "*"