docs: fix formatting in README and SECURITY files; update links in intro.md and sources.json

Author: Nathan-D-R

README.md

@@ -9,7 +9,7 @@
 > Part of the [OpenProteo](https://sigilweaver.app/openproteo/docs/)
 > stack for proteomics raw-file access. Sibling readers:
 > [OpenTFRaw](https://github.com/Sigilweaver/OpenTFRaw) (Thermo),
-> [OpenTimsTDF](https://github.com/Sigilweaver/OpenTDF) (Bruker).
+> [OpenTimsTDF](https://github.com/Sigilweaver/OpenTimsTDF) (Bruker).
 
 Rust and Python reader for the Waters MassLynx RAW mass spectrometry
 data format. Cross-platform (Linux, macOS, Windows), with no native or

SECURITY.md

@@ -72,6 +72,6 @@ OpenWRaw is one of three vendor readers in the
 [OpenProteo](https://github.com/Sigilweaver/OpenProteo) stack.
 Sibling readers:
 [OpenTFRaw](https://github.com/Sigilweaver/OpenTFRaw) (Thermo),
-[OpenTimsTDF](https://github.com/Sigilweaver/OpenTDF) (Bruker).
+[OpenTimsTDF](https://github.com/Sigilweaver/OpenTimsTDF) (Bruker).
 Shared foundation:
 [openproteo-core](https://github.com/Sigilweaver/OpenProteoCore).

docs/docs/intro.md

@@ -11,7 +11,7 @@ OpenWRaw is one of the vendor readers in
 [OpenProteo](https://sigilweaver.app/openproteo/docs/), a Rust- and
 Python-native stack for proteomics raw-file access. Sibling readers:
 [OpenTFRaw](https://sigilweaver.app/opentfraw/docs/) (Thermo `.raw`),
-[OpenTimsTDF](https://sigilweaver.app/opentdf/docs/) (Bruker `.d/`).
+[OpenTimsTDF](https://sigilweaver.app/OpenTimsTDF/docs/) (Bruker `.d/`).
 
 :::
 

scripts/sources.json

@@ -1,5 +1,5 @@
 [
-  {
-    "_comment": "Waters MassLynx .raw/ acquisition bundles ship as directories, not single files. The current shared OpenProteo fetcher only downloads single files; add entries here once directory-bundle support lands (see OpenProteo/docs/CORPUS.md). Schema reminder: vendor='waters', instrument, accession, files[] or count, optional format_version / acquisition_mode / expected_spectrum_count / notes."
-  }
+    {
+        "_comment": "Waters MassLynx .raw/ acquisition bundles ship as directories, not single files. The current shared OpenProteo fetcher only downloads single files; add entries here once directory-bundle support lands (see OpenProteo/docs/CORPUS.md). Schema reminder: vendor='waters', instrument, accession, files[] or count, optional format_version / acquisition_mode / expected_spectrum_count / notes."
+    }
 ]