a modified version of data context for funseq2 at PCAWG project
Pre-built data context sources
- used by [ FunSeq2_DC version 3 ] (http://khuranalab.med.cornell.edu/data.html)
- used by FunSeq2 publication
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Fix new spliceOverlap annotations from VAT
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Map current terms to sequence ontology terms
- splice_variant means either splice_donor or splice_receptor
- Change enhancer annotations to include tissue-specificity
- code is modified to incorporate specific format.
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Remove hierarchy and annotate all
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Do not remove germline
- MAF=1