glm-experiments/pyproject.toml at main · Open-Athena/glm-experiments · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "glm-experiments"
version = "0.0.1"
description = "gLM experiments"
readme = "README.md"
requires-python = ">=3.12,<3.14"
license = {text = "MIT"}
authors = [
    {name = "Gonzalo Benegas", email = "gonzalo.benegas@openathena.ai"},
]
keywords = ["pytorch", "lightning", "hydra", "machine-learning"]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
]

dependencies = [
    "torch>=2.0.0",
    "torchvision>=0.15.0",
    "lightning>=2.0.0",
    "torchmetrics>=0.11.4",
    "hydra-core>=1.3.0,<2.0.0",
    "hydra-colorlog>=1.2.0",
    "hydra-optuna-sweeper>=1.2.0",
    "rootutils",
    "rich>=13.0.0",
    "datasets>=2.14.0",
    "transformers>=4.30.0",
    "biopython>=1.81",
    "zstandard>=0.18.0",
    "wandb>=0.23.0",
    "einops>=0.7.0",
    "einx>=0.3.0",
    "jaxtyping>=0.2.0",
    "biofoundation @ git+https://github.com/Open-Athena/biofoundation.git@d3865288bbb4b5ab814df85599381f206e375fe6",
]

[dependency-groups]
dev = [
    "pytest>=7.0.0",
    "pre-commit>=3.0.0",
]

[project.scripts]
train_command = "glm_experiments.train:main"
eval_command = "glm_experiments.eval:main"

[tool.hatch.metadata]
allow-direct-references = true

[tool.hatchling.build]
packages = ["glm_experiments"]

[tool.pytest.ini_options]
addopts = [
  "--color=yes",
  "--durations=0",
  "--strict-markers",
  "--doctest-modules",
]
filterwarnings = [
  "ignore::DeprecationWarning",
  "ignore::UserWarning",
]
log_cli = "True"
markers = [
  "slow: slow tests",
]
minversion = "6.0"
testpaths = "tests/"

[tool.coverage.report]
exclude_lines = [
    "pragma: nocover",
    "raise NotImplementedError",
    "raise NotImplementedError()",
    "if __name__ == .__main__.:",
]