From e9660183670d5a23ff8568bbb5ec762718c648a9 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 21 Apr 2026 17:27:30 +0000 Subject: [PATCH] Bump nbconvert from 6.5.4 to 7.17.1 Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 6.5.4 to 7.17.1. - [Release notes](https://github.com/jupyter/nbconvert/releases) - [Changelog](https://github.com/jupyter/nbconvert/blob/main/CHANGELOG.md) - [Commits](https://github.com/jupyter/nbconvert/commits/v7.17.1) --- updated-dependencies: - dependency-name: nbconvert dependency-version: 7.17.1 dependency-type: indirect ... Signed-off-by: dependabot[bot] --- poetry.lock | 126 +--------------------------------------------------- 1 file changed, 2 insertions(+), 124 deletions(-) diff --git a/poetry.lock b/poetry.lock index 9948e59..282ac21 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 2.3.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.2.1 and should not be changed by hand. [[package]] name = "anyio" @@ -186,7 +186,6 @@ description = "Create and validate BagIt packages" optional = false python-versions = "*" groups = ["main"] -markers = "python_version >= \"3.14\"" files = [ {file = "bagit-1.9.0.tar.gz", hash = "sha256:9455006c2d1df88be95ec1fccabc5ea623389589ea4c85b3d85bd256f29d7656"}, ] @@ -967,7 +966,6 @@ description = "Common workflow language reference implementation" optional = false python-versions = ">=3.6, <4" groups = ["main"] -markers = "python_version >= \"3.14\"" files = [ {file = "cwltool-3.1.20220907141119-py3-none-any.whl", hash = "sha256:7680e48c13956bb2779a05a79c082d9f37c8049cabfcb06a2f6db0dd78e7d615"}, {file = "cwltool-3.1.20220907141119.tar.gz", hash = "sha256:b322be0ebe0df0c14e38e16d7c8d86458f280f4f3d7717d615b132065efa5b66"}, @@ -994,40 +992,6 @@ typing-extensions = "*" [package.extras] deps = ["galaxy-tool-util (>=22.1.2,<23)"] -[[package]] -name = "cwltool" -version = "3.2.20260411152607" -description = "Common workflow language reference implementation" -optional = false -python-versions = "<3.15,>=3.10" -groups = ["main"] -markers = "python_version < \"3.14\"" -files = [ - {file = "cwltool-3.2.20260411152607-py3-none-any.whl", hash = "sha256:7087c194211c33b16f0e415b36cd5577fbdd52d0ca6d58e767896c57a802b473"}, - {file = "cwltool-3.2.20260411152607.tar.gz", hash = "sha256:4edf0f86dfe37a814ac647a92ce88f1b60559bc4f4980d00e95f3082ffa5502c"}, -] - -[package.dependencies] -argcomplete = ">=1.12.0" -coloredlogs = "*" -cwl-utils = ">=0.41" -mypy-extensions = "*" -prov = "1.5.1" -psutil = ">=5.6.6" -pydot = ">=1.4.1" -pygments = ">=2.20.0" -pyparsing = "!=3.0.2" -rdflib = ">=4.2.2,<7.7.0" -requests = ">=2.6.1" -rich-argparse = "*" -"ruamel.yaml" = ">=0.16,<0.20" -schema-salad = ">=8.9,<9" -spython = ">=0.3.0" -typing-extensions = ">=4.1.0" - -[package.extras] -deps = ["galaxy-tool-util (>=22.1.2,!=23.0.1,!=23.0.2,!=23.0.3,!=23.0.4,!=23.0.5,<26.1)", "galaxy-util (<26.1)", "pillow"] - [[package]] name = "cycler" version = "0.12.1" @@ -1588,7 +1552,6 @@ description = "An ISO 8601 date/time/duration parser and formatter" optional = false python-versions = ">=3.7" groups = ["main"] -markers = "python_version >= \"3.14\"" files = [ {file = "isodate-0.7.2-py3-none-any.whl", hash = "sha256:28009937d8031054830160fce6d409ed342816b543597cece116d966c6d99e15"}, {file = "isodate-0.7.2.tar.gz", hash = "sha256:4cd1aa0f43ca76f4a6c6c0292a85f40b35ec2e43e315b59f06e6d32171a953e6"}, @@ -1689,7 +1652,7 @@ fqdn = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} idna = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} isoduration = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format-nongpl\""} -jsonschema-specifications = ">=2023.3.6" +jsonschema-specifications = ">=2023.03.6" referencing = ">=0.28.4" rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format-nongpl\""} rfc3986-validator = {version = ">0.1.0", optional = true, markers = "extra == \"format-nongpl\""} @@ -2792,7 +2755,6 @@ description = "Python package for creating and manipulating graphs and networks" optional = false python-versions = ">=3.11" groups = ["main"] -markers = "python_version >= \"3.14\"" files = [ {file = "networkx-3.6-py3-none-any.whl", hash = "sha256:cdb395b105806062473d3be36458d8f1459a4e4b98e236a66c3a48996e07684f"}, {file = "networkx-3.6.tar.gz", hash = "sha256:285276002ad1f7f7da0f7b42f004bcba70d381e936559166363707fdad3d72ad"}, @@ -2809,30 +2771,6 @@ release = ["build (>=0.10)", "changelist (==0.5)", "twine (>=4.0)", "wheel (>=0. test = ["pytest (>=7.2)", "pytest-cov (>=4.0)", "pytest-xdist (>=3.0)"] test-extras = ["pytest-mpl", "pytest-randomly"] -[[package]] -name = "networkx" -version = "3.6.1" -description = "Python package for creating and manipulating graphs and networks" -optional = false -python-versions = "!=3.14.1,>=3.11" -groups = ["main"] -markers = "python_version < \"3.14\"" -files = [ - {file = "networkx-3.6.1-py3-none-any.whl", hash = "sha256:d47fbf302e7d9cbbb9e2555a0d267983d2aa476bac30e90dfbe5669bd57f3762"}, - {file = "networkx-3.6.1.tar.gz", hash = "sha256:26b7c357accc0c8cde558ad486283728b65b6a95d85ee1cd66bafab4c8168509"}, -] - -[package.extras] -benchmarking = ["asv", "virtualenv"] -default = ["matplotlib (>=3.8)", "numpy (>=1.25)", "pandas (>=2.0)", "scipy (>=1.11.2)"] -developer = ["mypy (>=1.15)", "pre-commit (>=4.1)"] -doc = ["intersphinx-registry", "myst-nb (>=1.1)", "numpydoc (>=1.8.0)", "pillow (>=10)", "pydata-sphinx-theme (>=0.16)", "sphinx (>=8.0)", "sphinx-gallery (>=0.18)", "texext (>=0.6.7)"] -example = ["cairocffi (>=1.7)", "contextily (>=1.6)", "igraph (>=0.11)", "iplotx (>=0.9.0)", "momepy (>=0.7.2)", "osmnx (>=2.0.0)", "scikit-learn (>=1.5)", "seaborn (>=0.13)"] -extra = ["lxml (>=4.6)", "pydot (>=3.0.1)", "pygraphviz (>=1.14)", "sympy (>=1.10)"] -release = ["build (>=0.10)", "changelist (==0.5)", "twine (>=4.0)", "wheel (>=0.40)"] -test = ["pytest (>=7.2)", "pytest-cov (>=4.0)", "pytest-xdist (>=3.0)"] -test-extras = ["pytest-mpl", "pytest-randomly"] - [[package]] name = "notebook" version = "7.5.5" @@ -3853,7 +3791,6 @@ description = "RDFLib is a Python library for working with RDF, a simple yet pow optional = false python-versions = ">=3.7" groups = ["main"] -markers = "python_version >= \"3.14\"" files = [ {file = "rdflib-6.2.0-py3-none-any.whl", hash = "sha256:85c34a86dfc517a41e5f2425a41a0aceacc23983462b32e68610b9fad1383bca"}, {file = "rdflib-6.2.0.tar.gz", hash = "sha256:62dc3c86d1712db0f55785baf8047f63731fa59b2682be03219cb89262065942"}, @@ -3872,31 +3809,6 @@ html = ["html5lib"] networkx = ["networkx"] tests = ["html5lib", "pytest", "pytest-cov"] -[[package]] -name = "rdflib" -version = "7.6.0" -description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information." -optional = false -python-versions = ">=3.8.1" -groups = ["main"] -markers = "python_version < \"3.14\"" -files = [ - {file = "rdflib-7.6.0-py3-none-any.whl", hash = "sha256:30c0a3ebf4c0e09215f066be7246794b6492e054e782d7ac2a34c9f70a15e0dd"}, - {file = "rdflib-7.6.0.tar.gz", hash = "sha256:6c831288d5e4a5a7ece85d0ccde9877d512a3d0f02d7c06455d00d6d0ea379df"}, -] - -[package.dependencies] -pyparsing = ">=2.1.0,<4" - -[package.extras] -berkeleydb = ["berkeleydb (>=18.1.0,<19.0.0)"] -graphdb = ["httpx (>=0.28.1,<0.29.0)"] -html = ["html5rdf (>=1.2,<2)"] -lxml = ["lxml (>=4.3,<6.0)"] -networkx = ["networkx (>=2,<4)"] -orjson = ["orjson (>=3.9.14,<4)"] -rdf4j = ["httpx (>=0.28.1,<0.29.0)"] - [[package]] name = "referencing" version = "0.37.0" @@ -4148,7 +4060,6 @@ description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip pres optional = false python-versions = ">=3" groups = ["main"] -markers = "python_version >= \"3.14\"" files = [ {file = "ruamel.yaml-0.17.21-py3-none-any.whl", hash = "sha256:742b35d3d665023981bd6d16b3d24248ce5df75fdb4e2924e93a05c1f8b61ca7"}, {file = "ruamel.yaml-0.17.21.tar.gz", hash = "sha256:8b7ce697a2f212752a35c1ac414471dc16c424c9573be4926b56ff3f5d23b7af"}, @@ -4158,25 +4069,6 @@ files = [ docs = ["ryd"] jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"] -[[package]] -name = "ruamel-yaml" -version = "0.19.1" -description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order" -optional = false -python-versions = ">=3.9" -groups = ["main"] -markers = "python_version < \"3.14\"" -files = [ - {file = "ruamel_yaml-0.19.1-py3-none-any.whl", hash = "sha256:27592957fedf6e0b62f281e96effd28043345e0e66001f97683aa9a40c667c93"}, - {file = "ruamel_yaml-0.19.1.tar.gz", hash = "sha256:53eb66cd27849eff968ebf8f0bf61f46cdac2da1d1f3576dd4ccee9b25c31993"}, -] - -[package.extras] -docs = ["mercurial (>5.7)", "ryd"] -jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"] -libyaml = ["ruamel.yaml.clibz (>=0.3.7) ; platform_python_implementation == \"CPython\""] -oldlibyaml = ["ruamel.yaml.clib ; platform_python_implementation == \"CPython\""] - [[package]] name = "schema-salad" version = "8.3.20220801194920" @@ -4429,7 +4321,6 @@ description = "Shell escape a string to safely use it as a token in a shell comm optional = false python-versions = "*" groups = ["main"] -markers = "python_version >= \"3.14\"" files = [ {file = "shellescape-3.8.1-py2.py3-none-any.whl", hash = "sha256:f17127e390fa3f9aaa80c69c16ea73615fd9b5318fd8309c1dca6168ae7d85bf"}, {file = "shellescape-3.8.1.tar.gz", hash = "sha256:40b310b30479be771bf3ab28bd8d40753778488bd46ea0969ba0b35038c3ec26"}, @@ -4471,19 +4362,6 @@ files = [ {file = "soupsieve-2.8.3.tar.gz", hash = "sha256:3267f1eeea4251fb42728b6dfb746edc9acaffc4a45b27e19450b676586e8349"}, ] -[[package]] -name = "spython" -version = "0.3.14" -description = "Command line python tool for working with singularity." -optional = false -python-versions = "*" -groups = ["main"] -markers = "python_version < \"3.14\"" -files = [ - {file = "spython-0.3.14-py3-none-any.whl", hash = "sha256:72968583e498bc2a51f9acd0ed6bc0d7d1f7ccd491feaba5e2f7d944bc51da3a"}, - {file = "spython-0.3.14.tar.gz", hash = "sha256:8ad53ef034395cfa2d8a710cc1c3638e4475e5bbc6a2842d317db8013c2e4188"}, -] - [[package]] name = "stack-data" version = "0.6.3"