alphatims/pyproject.toml at main · MannLabs/alphatims · GitHub

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[build-system]
requires = ["setuptools"]
build-backend = "setuptools.build_meta"

[project]
name = "alphatims"
requires-python = ">=3.8"
dynamic = ["version", "dependencies", "optional-dependencies"]

authors = [
    {name = "Sander Willems", email = "opensource@alphapept.com"},
    {name = "Eugenia Voytik", email = "opensource@alphapept.com"}
]

readme = "README.md"
keywords = [
    "proteomics",
    "mass spectrometry",
    "bruker",
    "timsTOF",
    "bioinformatics",
    "data indexing",
    "AlphaPept",
    "AlphaPept ecosystem",
    "alphapept.org",
]
license = {file = "LICENSE.txt"}
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
]

[project.urls]

repository = "https://github.com/MannLabs/alphatims"
issues = "https://github.com/MannLabs/alphatims/issues"
download = "https://mannlabs.github.io/alphatims/releases"
documentation = "https://alphatims.readthedocs.io/en/latest/"
homepage = "https://www.alphapept.org"
"Mann Labs Homepage" = "https://www.biochem.mpg.de/mann"
publication = "https://doi.org/10.1016/j.mcpro.2021.100149"

[tool.setuptools.packages]
find = {}

[tool.setuptools.dynamic]
# https://stackoverflow.com/a/73600610
dependencies = {file = ["requirements/requirements_loose.txt"]}

optional-dependencies.stable = { file = ["requirements/requirements.txt"] }
optional-dependencies.legacy = { file = ["requirements/requirements_legacy_loose.txt"] }
optional-dependencies.legacy-stable = { file = ["requirements/requirements_legacy.txt"] }
optional-dependencies.plotting = { file = ["requirements/requirements_plotting_loose.txt"] }  # TODO rename to 'gui'
optional-dependencies.plotting-stable = { file = ["requirements/requirements_plotting.txt"] }
optional-dependencies.development = { file = ["requirements/requirements_development.txt"] }

version = {attr = "alphatims.__version__"}

[project.scripts]
alphatims = "alphatims.cli:run"