Add HPC workflow for fMRIPrep OpenNeuro cohort #9

	name: test-and-coverage

	on:
	pull_request:
	push:
	branches:
	- main
	- master

	permissions:
	contents: read

	jobs:
	tests:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r requirements-core.txt
	pip install pytest pytest-cov pytest-mock pip-audit

	- name: Audit dependencies
	run: python -m pip_audit

	- name: Run tests with coverage
	run: pytest

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v5
	with:
	files: ./coverage.xml
	fail_ci_if_error: false
	token: ${{ secrets.CODECOV_TOKEN }}
	verbose: true

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