Fixing missing data in associations payload (#159)

andrew-e · web-flow · commit 27bc6142b51b · 2026-03-20T15:03:55.000Z
diff --git a/tests/testing_complete.txt b/tests/testing_complete.txt
@@ -1 +1 @@
-SUCCESS: All tests passed on branch: bug/extract-standardise-columns
+SUCCESS: All tests passed on branch: bug/missing-beta-in-associations
diff --git a/worker/compile_pipeline_results.R b/worker/compile_pipeline_results.R
@@ -278,6 +278,8 @@ find_associations_for_coloc_clustered_snps <- function(
     imputed = IMPUTED
   )], by = c("study_name", "snp"))
 
+  associations <- stats::na.omit(associations)
+
   flog.info(paste(
     gwas_info$metadata$guid,
     "Extracted",

Original file line number	Diff line number	Diff line change
`@@ -1 +1 @@`
`1`		`-SUCCESS: All tests passed on branch: bug/extract-standardise-columns`
	`1`	`+SUCCESS: All tests passed on branch: bug/missing-beta-in-associations`