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28 lines (28 loc) · 1.07 KB
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cff-version: 1.2.0
title: "Teal: Timelapse Express Analysis Library"
message: "If you use Teal in your research, please cite it as below."
type: software
authors:
- given-names: Benjamin
family-names: Lapointe
email: benjamin.lapointe@umontreal.ca
affiliation: Université de Montréal
repository-code: "https://github.com/IronSheep16/Teal"
abstract: >-
Teal analyses cell lineage data from timelapse microscopy. It builds a single
spatiotemporal graph in which every cell is a node carrying its attributes, its
timepoint and the mesh labels it came from, connected by lineage edges (parent to
child) and spatial edges (neighbouring cells). Samples exported as several
overlapping meshes are merged into one graph, including cells imaged in more than
one mesh and cells whose parent lies in another mesh. Built to round-trip with
MorphoGraphX, though any connected cell mesh works.
keywords:
- cell lineage
- lineage tracing
- timelapse microscopy
- morphogenesis
- MorphoGraphX
- bioimage analysis
license: GPL-2.0
version: 0.1.0
doi: 10.5281/zenodo.21340656