From 8d0cbc94250a19bb68fb9d245e38474adef6f432 Mon Sep 17 00:00:00 2001 From: VenkateshPabbati Date: Thu, 27 Aug 2026 17:19:41 +0530 Subject: [PATCH 01/11] Create dependabot.yml --- .github/dependabot.yml | 11 +++++++++++ 1 file changed, 11 insertions(+) create mode 100644 .github/dependabot.yml diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000000..9d866e3928 --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,11 @@ +# To get started with Dependabot version updates, you'll need to specify which +# package ecosystems to update and where the package manifests are located. +# Please see the documentation for all configuration options: +# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file + +version: 2 +updates: + - package-ecosystem: "pip" # See documentation for possible values + directory: "/" # Location of package manifests + schedule: + interval: "weekly" From 7de9a40ab5caa18de1f5b9e588abf470af135cd0 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 27 Aug 2026 11:50:40 +0000 Subject: [PATCH 02/11] chore(deps): update tree-sitter requirement Updates the requirements on [tree-sitter](https://github.com/tree-sitter/py-tree-sitter) to permit the latest version. - [Release notes](https://github.com/tree-sitter/py-tree-sitter/releases) - [Commits](https://github.com/tree-sitter/py-tree-sitter/compare/v0.23.0...v0.26.0) --- updated-dependencies: - dependency-name: tree-sitter dependency-version: 0.26.0 dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index d2b8235d2c..f633193639 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,7 +15,7 @@ dependencies = [ "networkx>=3.4", "numpy>=1.21", "rapidfuzz>=3.0", - "tree-sitter>=0.23.0,<0.26", + "tree-sitter>=0.23.0,<0.27", "tree-sitter-python>=0.23,<0.26", "tree-sitter-javascript>=0.23,<0.26", "tree-sitter-typescript>=0.23,<0.25", From f0c28657782c9b73ed41a7a6b93249dc8f684ed4 Mon Sep 17 00:00:00 2001 From: VenkateshPabbati Date: Thu, 27 Aug 2026 17:25:24 +0530 Subject: [PATCH 03/11] Potential fix for code scanning alert no. 13: Use of a broken or weak cryptographic hashing algorithm on sensitive data Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> --- worked/httpx/raw/auth.py | 16 ++++++++++++---- 1 file changed, 12 insertions(+), 4 deletions(-) diff --git a/worked/httpx/raw/auth.py b/worked/httpx/raw/auth.py index 290cadd3e1..0ab7ab3a05 100644 --- a/worked/httpx/raw/auth.py +++ b/worked/httpx/raw/auth.py @@ -82,13 +82,21 @@ def _build_credentials(self, request: Request, challenge: dict) -> str: """Compute the Authorization header value for a digest challenge.""" self._nonce_count += 1 nc = f"{self._nonce_count:08x}" - cnonce = hashlib.md5(str(time.time()).encode()).hexdigest()[:8] realm = challenge.get("realm", "") nonce = challenge.get("nonce", "") + algorithm = challenge.get("algorithm", "MD5").upper() - ha1 = hashlib.md5(f"{self.username}:{realm}:{self.password}".encode()).hexdigest() - ha2 = hashlib.md5(f"{request.method}:{request.url.path}".encode()).hexdigest() - response_hash = hashlib.md5(f"{ha1}:{nonce}:{nc}:{cnonce}:auth:{ha2}".encode()).hexdigest() + def _hash_hex(value: str) -> str: + data = value.encode() + if algorithm in ("SHA-256", "SHA-256-SESS"): + return hashlib.sha256(data).hexdigest() + return hashlib.md5(data).hexdigest() + + cnonce = _hash_hex(str(time.time()))[:8] + + ha1 = _hash_hex(f"{self.username}:{realm}:{self.password}") + ha2 = _hash_hex(f"{request.method}:{request.url.path}") + response_hash = _hash_hex(f"{ha1}:{nonce}:{nc}:{cnonce}:auth:{ha2}") return ( f'Digest username="{self.username}", realm="{realm}", ' From becf8eb0cedf20a6564ef45d5855e957bcedd8b6 Mon Sep 17 00:00:00 2001 From: VenkateshPabbati Date: Thu, 27 Aug 2026 17:26:45 +0530 Subject: [PATCH 04/11] Potential fix for code scanning alert no. 12: Bad HTML filtering regexp Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> --- graphify/extractors/resolution.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/graphify/extractors/resolution.py b/graphify/extractors/resolution.py index 5369637aeb..a0ec801ea5 100644 --- a/graphify/extractors/resolution.py +++ b/graphify/extractors/resolution.py @@ -606,7 +606,7 @@ def _resolve_lua_import_target(raw_module: str, str_path: str) -> str: return _make_id(raw_module) _VUE_SCRIPT_RE = re.compile( - r"""("'])*>)([\s\S]*?)()""", + r"""("'])*>)([\s\S]*?)(]*>)""", re.IGNORECASE, ) From 05c211361193bd4feff39047c99b1d556c7d4481 Mon Sep 17 00:00:00 2001 From: VenkateshPabbati Date: Thu, 27 Aug 2026 17:27:24 +0530 Subject: [PATCH 05/11] Potential fix for code scanning alert no. 8: Incomplete URL substring sanitization Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> --- graphify/ingest.py | 14 ++++++++------ 1 file changed, 8 insertions(+), 6 deletions(-) diff --git a/graphify/ingest.py b/graphify/ingest.py index 86b9b7531f..ba3e1e129d 100644 --- a/graphify/ingest.py +++ b/graphify/ingest.py @@ -63,16 +63,18 @@ def _safe_filename(url: str, suffix: str) -> str: def _detect_url_type(url: str) -> str: """Classify the URL for targeted extraction.""" - lower = url.lower() - if "twitter.com" in lower or "x.com" in lower: + parsed = urllib.parse.urlparse(url) + host = (parsed.hostname or "").lower() + + if host in {"twitter.com", "x.com"} or host.endswith(".twitter.com") or host.endswith(".x.com"): return "tweet" - if "arxiv.org" in lower: + if host == "arxiv.org" or host.endswith(".arxiv.org"): return "arxiv" - if "github.com" in lower: + if host == "github.com" or host.endswith(".github.com"): return "github" - if "youtube.com" in lower or "youtu.be" in lower: + if host == "youtube.com" or host.endswith(".youtube.com") or host == "youtu.be" or host.endswith(".youtu.be"): return "youtube" - parsed = urllib.parse.urlparse(url) + path = parsed.path.lower() if path.endswith(".pdf"): return "pdf" From 1161178c831bb9599de99c08c2cb457201a4f2e6 Mon Sep 17 00:00:00 2001 From: VenkateshPabbati Date: Thu, 27 Aug 2026 17:28:58 +0530 Subject: [PATCH 06/11] Potential fix for code scanning alert no. 10: Bad HTML filtering regexp Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> --- graphify/extract.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/graphify/extract.py b/graphify/extract.py index f68757a85f..c75238bc70 100644 --- a/graphify/extract.py +++ b/graphify/extract.py @@ -1692,7 +1692,7 @@ def extract_astro(path: Path) -> dict: r"\A\s*---\s*\r?\n([\s\S]*?)\r?\n---\s*(?:\r?\n|\Z)" ) script_re = _re.compile( - r"]*>([\s\S]*?)", _re.IGNORECASE + r"]*>([\s\S]*?)]*>", _re.IGNORECASE ) static_import_re = _re.compile( r"""import\s+(?:[^'"`;]+?\s+from\s+)?['"]([^'"]+)['"]""" From f36ac186ac2d50f97b91c3058ae694b24f2bf766 Mon Sep 17 00:00:00 2001 From: VenkateshPabbati Date: Thu, 27 Aug 2026 17:29:04 +0530 Subject: [PATCH 07/11] Potential fix for code scanning alert no. 9: Bad HTML filtering regexp Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> --- graphify/extract.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/graphify/extract.py b/graphify/extract.py index f68757a85f..b38536cf9a 100644 --- a/graphify/extract.py +++ b/graphify/extract.py @@ -1634,7 +1634,7 @@ def extract_svelte(path: Path) -> dict: # static imports are silently dropped (#713). Regex over each script # body recovers them. script_re = _re.compile( - r"]*>([\s\S]*?)", _re.IGNORECASE + r"]*>([\s\S]*?)]*)?>", _re.IGNORECASE ) static_import_re = _re.compile( r"""import\s+(?:[^'"`;]+?\s+from\s+)?['"]([^'"]+)['"]""" From 465c49baa55a9ad39b755b1f513d2250057a9da8 Mon Sep 17 00:00:00 2001 From: VenkateshPabbati Date: Thu, 27 Aug 2026 17:30:26 +0530 Subject: [PATCH 08/11] Potential fix for code scanning alert no. 7: Incomplete URL substring sanitization Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> --- graphify/ingest.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/graphify/ingest.py b/graphify/ingest.py index 86b9b7531f..74e83ece9b 100644 --- a/graphify/ingest.py +++ b/graphify/ingest.py @@ -63,16 +63,16 @@ def _safe_filename(url: str, suffix: str) -> str: def _detect_url_type(url: str) -> str: """Classify the URL for targeted extraction.""" - lower = url.lower() - if "twitter.com" in lower or "x.com" in lower: + parsed = urllib.parse.urlparse(url) + host = (parsed.hostname or "").lower() + if host == "twitter.com" or host.endswith(".twitter.com") or host == "x.com" or host.endswith(".x.com"): return "tweet" - if "arxiv.org" in lower: + if host == "arxiv.org" or host.endswith(".arxiv.org"): return "arxiv" - if "github.com" in lower: + if host == "github.com" or host.endswith(".github.com"): return "github" - if "youtube.com" in lower or "youtu.be" in lower: + if host == "youtube.com" or host.endswith(".youtube.com") or host == "youtu.be" or host.endswith(".youtu.be"): return "youtube" - parsed = urllib.parse.urlparse(url) path = parsed.path.lower() if path.endswith(".pdf"): return "pdf" From daf2074a7d2b6db818f423b8186be544fdd3ecee Mon Sep 17 00:00:00 2001 From: VenkateshPabbati Date: Thu, 27 Aug 2026 17:34:03 +0530 Subject: [PATCH 09/11] Potential fix for pull request finding 'CodeQL / Use of a broken or weak cryptographic hashing algorithm on sensitive data' Co-authored-by: Copilot Autofix powered by AI <62310815+github-advanced-security[bot]@users.noreply.github.com> --- worked/httpx/raw/auth.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/worked/httpx/raw/auth.py b/worked/httpx/raw/auth.py index 0ab7ab3a05..ad3c079566 100644 --- a/worked/httpx/raw/auth.py +++ b/worked/httpx/raw/auth.py @@ -84,13 +84,13 @@ def _build_credentials(self, request: Request, challenge: dict) -> str: nc = f"{self._nonce_count:08x}" realm = challenge.get("realm", "") nonce = challenge.get("nonce", "") - algorithm = challenge.get("algorithm", "MD5").upper() + algorithm = challenge.get("algorithm", "SHA-256").upper() def _hash_hex(value: str) -> str: data = value.encode() if algorithm in ("SHA-256", "SHA-256-SESS"): return hashlib.sha256(data).hexdigest() - return hashlib.md5(data).hexdigest() + raise ValueError(f"Unsupported or weak digest algorithm: {algorithm}") cnonce = _hash_hex(str(time.time()))[:8] From 7636d842c402f8f9eb62d5b488c1cd5c41513309 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 27 Aug 2026 12:07:23 +0000 Subject: [PATCH 10/11] chore(deps): bump the uv group across 1 directory with 7 updates Bumps the uv group with 7 updates in the / directory: | Package | From | To | | --- | --- | --- | | [pypdf](https://github.com/py-pdf/pypdf) | `6.13.3` | `6.15.0` | | [yt-dlp](https://github.com/yt-dlp/yt-dlp) | `2026.6.9` | `2026.7.4` | | [setuptools](https://github.com/pypa/setuptools) | `82.0.1` | `83.0.0` | | [cryptography](https://github.com/pyca/cryptography) | `49.0.0` | `50.0.0` | | [pillow](https://github.com/python-pillow/Pillow) | `12.2.0` | `12.3.0` | | [pip](https://github.com/pypa/pip) | `26.1.1` | `26.1.2` | | [soupsieve](https://github.com/facelessuser/soupsieve) | `2.8.3` | `2.8.4` | Updates `pypdf` from 6.13.3 to 6.15.0 - [Release notes](https://github.com/py-pdf/pypdf/releases) - [Changelog](https://github.com/py-pdf/pypdf/blob/main/CHANGELOG.md) - [Commits](https://github.com/py-pdf/pypdf/compare/6.13.3...6.15.0) Updates `yt-dlp` from 2026.6.9 to 2026.7.4 - [Release notes](https://github.com/yt-dlp/yt-dlp/releases) - [Changelog](https://github.com/yt-dlp/yt-dlp/blob/master/Changelog.md) - [Commits](https://github.com/yt-dlp/yt-dlp/compare/2026.06.09...2026.07.04) Updates `setuptools` from 82.0.1 to 83.0.0 - [Release notes](https://github.com/pypa/setuptools/releases) - [Changelog](https://github.com/pypa/setuptools/blob/main/NEWS.rst) - [Commits](https://github.com/pypa/setuptools/compare/v82.0.1...v83.0.0) Updates `cryptography` from 49.0.0 to 50.0.0 - [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pyca/cryptography/compare/49.0.0...50.0.0) Updates `pillow` from 12.2.0 to 12.3.0 - [Release notes](https://github.com/python-pillow/Pillow/releases) - [Changelog](https://github.com/python-pillow/Pillow/blob/main/CHANGES.rst) - [Commits](https://github.com/python-pillow/Pillow/compare/12.2.0...12.3.0) Updates `pip` from 26.1.1 to 26.1.2 - [Changelog](https://github.com/pypa/pip/blob/main/NEWS.rst) - [Commits](https://github.com/pypa/pip/compare/26.1.1...26.1.2) Updates `soupsieve` from 2.8.3 to 2.8.4 - [Release notes](https://github.com/facelessuser/soupsieve/releases) - [Commits](https://github.com/facelessuser/soupsieve/compare/2.8.3...2.8.4) --- updated-dependencies: - dependency-name: pypdf dependency-version: 6.15.0 dependency-type: direct:production dependency-group: uv - dependency-name: yt-dlp dependency-version: 2026.7.4 dependency-type: direct:production dependency-group: uv - dependency-name: setuptools dependency-version: 83.0.0 dependency-type: direct:development dependency-group: uv - dependency-name: cryptography dependency-version: 50.0.0 dependency-type: indirect dependency-group: uv - dependency-name: pillow dependency-version: 12.3.0 dependency-type: indirect dependency-group: uv - dependency-name: pip dependency-version: 26.1.2 dependency-type: indirect dependency-group: uv - dependency-name: soupsieve dependency-version: 2.8.4 dependency-type: indirect dependency-group: uv ... 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b/graphify/extractors/dart.py @@ -16,10 +16,10 @@ def extract_dart(path: Path) -> dict: # Remove inline and multi-line comments while leaving string literals untouched to prevent stripping URLs/paths inside strings comment_string_pattern = re.compile( - r'"""(?:\\.|[\s\S])*?"""' - r"|'''(?:\\.|[\s\S])*?'''" - r'|"(?:\\.|[^"\\])*"' - r"|'(?:\\.|[^'\\])*'" + r'r?"""(?:\\.|[\s\S])*?"""' # Add r? to match raw triple-quoted strings + r"|r?'''(?:\\.|[\s\S])*?'''" # Add r? here too + r'|r?"(?:\\.|[^"\\])*"' # Add r? for regular double-quoted + r"|r?'(?:\\.|[^'\\])*'" # Add r? for regular single-quoted r"|/\*[\s\S]*?\*/" r"|//[^\n]*" )