Roadmap

[joshmoore]

v0.1

The first goal of this repository is to provide a landing page for anyone wanting to use LD/RDF representations of the OME Model.

• Code
  • Convert OME-XSD to LinkML (using ome-types)
  • Define omero-marshal URIs in LinkML
  • Review URIs between omero-marshal (v1), omero-rdf (v2), and ld.o.org
  • Convert XML to RDF
  • Convert RDF to XML
  • Write unit tests to show that conversion is lossless
• Landing page ("ome.github.io/ld")
  • publish to ld.openmicroscopy.org
  • Decide if this is under an overarching standards org and how it relates to: NGFF, NGM, "BioImageLD (BILD)", GIDE, micRO-Crate, FAIR-IO (if at all)?
  • Include JSON-LD and Sparql playgrounds if possible
  • Provide some in-browser visualization, even when pointing to an OMERO?
  • Include information on specs like linkml and fairsignposting
  • Clearly explain the current OME(RO) RDF variants and converting between them
  • Define the future goals both for OMERO and IDR
  • Define Use cases features benefits etc.
  • Provide basics for learning about linked data (from existing books?)
  • Include IDR linkml and examples
  • Explain how to slurp into endpoint
  • Provide an example (or working buttons?) for sending to wikidata, etc.
  • How to convert OTHER xsds that use ld o org (LOO!)
  • List Funding on a page
  • Linked ome? Linked bioimaging?
  • Demo extension (in XSD?)

Next steps

• Evaluate an extension of this base model
• Create XSD for OMERO extensions beyond OME-XSD
• Support these XSD in ome-types
• Convert these XSD to LinkML
• Make default ome-types JSON into LD with @context
• Applications
  • integrate in omero-marshal
  • integrate in omero-transfer
  • integrate in omero-rdf