update restore step to avoid breaking renv

AdrienLeGuillou · AdrienLeGuillou · commit 3c12666076db · 2024-10-16T10:47:30.000+02:00
diff --git a/R/slurmworkflow_helpers.R b/R/slurmworkflow_helpers.R
@@ -140,7 +140,7 @@ step_tmpl_renv_restore <- function(git_branch, setup_lines = NULL) {
     "exit 1",
     "fi",
     "git pull",
-    "Rscript -e \"renv::init(bare = TRUE)\"",
+    "Rscript -e \"renv::init(bare = TRUE, load = FALSE)\"",
     "Rscript -e \"renv::restore()\""
   )
   instructions <- slurmworkflow::helper_use_setup_lines(instructions, setup_lines)

Original file line number	Diff line number	Diff line change
`@@ -140,7 +140,7 @@ step_tmpl_renv_restore <- function(git_branch, setup_lines = NULL) {`
`140`	`140`	`"exit 1",`
`141`	`141`	`"fi",`
`142`	`142`	`"git pull",`
`143`		`- "Rscript -e \"renv::init(bare = TRUE)\"",`
	`143`	`+ "Rscript -e \"renv::init(bare = TRUE, load = FALSE)\"",`
`144`	`144`	`"Rscript -e \"renv::restore()\""`
`145`	`145`	`)`
`146`	`146`	`instructions <- slurmworkflow::helper_use_setup_lines(instructions, setup_lines)`