chore: remove all references to deprecated init command

Removes calls to 'cortex init' from test scripts, installer scripts, and all documentation since the command was removed in previous commits.

Author: Saran-386

QUICKSTART.md

@@ -12,15 +12,7 @@ curl -sSL https://raw.githubusercontent.com/Dopove/Cortex/main/install.sh | bash
 
 Alternatively, you can move the `cortex` binary manually to your PATH.
 
-## 2. Initialize the Environment
-
-Cortex needs to verify your Python environment and hardware capabilities before its first run.
-
-```bash
-./cortex init
-```
-
-## 3. Create Your First Bundle
+## 2. Create Your First Bundle
 
 Cortex bundles contain your agent logic, dependencies, and model manifests.
 
@@ -29,7 +21,7 @@ Cortex bundles contain your agent logic, dependencies, and model manifests.
 ./cortex build path/to/your/agent-dir my-agent.cortex
 ```
 
-## 4. Run Your Agent
+## 3. Run Your Agent
 
 Execute your bundle. Cortex will automatically:
 
@@ -41,7 +33,7 @@ Execute your bundle. Cortex will automatically:
 ./cortex run my-first-agent.cortex
 ```
 
-## 5. Security: Encrypting Your Work (Optional)
+## 4. Security: Encrypting Your Work (Optional)
 
 To share bundles securely, add AES-256-GCM encryption.
 

README.md

@@ -49,23 +49,15 @@ Download the pre-compiled binary or archive for your system from **[GitHub Relea
 
 ---
 
-Finally, run `cortex init` to prepare your environment.
-
 ## 🚀 Quick Start
 
-### 1. Initialize Environment
-
-```bash
-./cortex init
-```
-
-### 2. Build a Bundle
+### 1. Build a Bundle
 
 ```bash
 ./cortex build path/to/your/agent-dir my-agent.cortex
 ```
 
-### 3. Run safely
+### 2. Run safely
 
 ```bash
 ./cortex run my-agent.cortex

USAGE_REFERENCE.md

@@ -6,7 +6,6 @@ Comprehensive documentation for all `cortex` subcommands.
 
 - [`build`](#build) - Pack a project directory into a `.cortex` bundle.
 - [`run`](#run) - Execute agents within a bundle.
-- [`init`](#init) - Initialize the execution environment.
 - [`info`](#info) - Inspect bundle contents.
 - [`encrypt`](#encrypt) - Secure a bundle with AES-256-GCM.
 - [`verify`](#verify) - Validate bundle integrity (Zstd + SHA256).
@@ -34,12 +33,6 @@ Inflates the bundle into a high-concurrency runtime.
 - **--gpu <ID>**: Enables CUDA acceleration for the specified GPU.
 - **--json**: Outputs real-time execution logs in JSON format for production indexing.
 
-### `init`
-
-`cortex init`
-
-Pre-flight check for the local machine. It detects AVX/CUDA capabilities and confirms Python 3.10+ availability.
-
 ### `encrypt`
 
 `cortex encrypt <BUNDLE>`

install.ps1

@@ -77,10 +77,8 @@ if ($currentPath -notlike "*$INSTALL_DIR*") {
     Write-Host "Added $INSTALL_DIR to User PATH." -ForegroundColor Yellow
 }
 
-# 6. Initialization
+# 6. Finalization
 Write-Host "Cortex installed successfully!" -ForegroundColor Green
-Write-Host "Running 'cortex init'..." -ForegroundColor Blue
-& $DEST_BINARY init
 
 Write-Host "`n========================================" -ForegroundColor Green
 Write-Host "Cortex $LATEST_TAG is now available globally." -ForegroundColor Green

install.sh

@@ -137,15 +137,8 @@ else
     chmod +x "$INSTALL_DIR/cortex"
 fi
 
-# 6. Initialization
+# 6. Finalization
 echo -e "${GREEN}Cortex installed successfully!${NC}"
-echo -e "${BLUE}Running 'cortex init'...${NC}"
-
-# Ensure standard library directory exists before initialization
-# This prevents "os error 2" in restricted Docker/CI environments
-mkdir -p "$HOME/.cortex/stdlib"
-
-"$INSTALL_DIR/cortex" init
 
 echo -e "\n${GREEN}========================================${NC}"
 echo -e "${GREEN}Cortex $LATEST_TAG is now available globally.${NC}"

rust/tests/cross_os_e2e.sh

@@ -31,12 +31,6 @@ if [ ! -f "$BIN_PATH" ]; then
    exit 1
 fi
 
-echo "==================================="
-echo "1. Testing Environment Initialization"
-echo "==================================="
-$BIN_PATH init
-echo "✅ Environment Initialized."
-
 echo "==================================="
 echo "2. Building Agent Bundle"
 echo "==================================="