The following error:
OSError: MCD file 'my_mcd.mcd' corrupted: inconsistent acquisition image data size
Causes an empty images.csv to be generated during panel generation. This means that no segmentation occurs because the tiff stacks do not exist, but it doesn't kill the pipeline until the export step, when it reads the empty CSV:
raise EmptyDataError("No columns to parse from file") from err
pandas.errors.EmptyDataError: No columns to parse from file
This is using steinbock v0.16.3.
Is there any workaround for processing mcds whose acquisitions were interrupted by machine failures? With lenient parsing with readimc 0.7.0, we are still able to view the images.
The following error:
Causes an empty
images.csvto be generated during panel generation. This means that no segmentation occurs because the tiff stacks do not exist, but it doesn't kill the pipeline until the export step, when it reads the empty CSV:This is using steinbock v0.16.3.
Is there any workaround for processing mcds whose acquisitions were interrupted by machine failures? With lenient parsing with
readimc 0.7.0, we are still able to view the images.