add fallback options for too many input genes #4

	name: Build and Deploy pkgdown

	on:
	push:
	branches: [main]
	workflow_dispatch:

	jobs:
	deploy:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout tkoi
	uses: actions/checkout@v4

	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- name: Install pandoc
	uses: r-lib/actions/setup-pandoc@v2

	- name: Install system dependencies
	run: sudo apt-get install -y libsodium-dev libcurl4-openssl-dev libssl-dev libxml2-dev

	- name: Install R dependencies
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: \|
	pkgdown
	any::devtools

	- name: Build pkgdown site
	run: Rscript -e "pkgdown::build_site()"

	- name: Deploy to baranzinilab.github.io
	run: \|
	git config --global user.name "github-actions[bot]"
	git config --global user.email "github-actions[bot]@users.noreply.github.com"
	git clone https://x-access-token:${{ secrets.PAGES_PAT }}@github.com/BaranziniLab/baranzinilab.github.io.git pages_repo
	rm -rf pages_repo/tkoi
	cp -r docs pages_repo/tkoi
	cd pages_repo
	git add tkoi/
	git diff --cached --quiet \|\| git commit -m "Auto-deploy tkoi docs from commit ${{ github.sha }}"
	git push
	cd ..
	rm -rf pages_repo

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