pyproject.toml

[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
# PyPI distribution name (`pip install syntha-ehr`) is separate from the
# import name (`import syntha`). The plain "syntha" name was already taken
# on PyPI when we tried to claim it. The longer name is more descriptive
# anyway — "syntha for electronic health records".
name = "syntha-ehr"
version = "0.5.10"
description = "Synthetic patient record generator (Synthea-inspired) trained on pristine-healthy episode data"
readme = "README.md"
license = { text = "Apache-2.0" }
requires-python = ">=3.10"
authors = [{ name = "Ario Moniri" }]
dependencies = [
    "pandas>=2.0",
    "numpy>=1.24",
    "scipy>=1.10",
    "scikit-learn>=1.3",
    "click>=8.0",
    "pyyaml>=6.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=7.0",
    "pytest-cov>=7.1.0",
    "matplotlib>=3.7",
    "ruff>=0.8",
    "pre-commit>=4.0",
]
mcp = [
    # Model Context Protocol SDK (Anthropic) — runs the syntha-mcp server
    # that lets Claude Desktop, Claude.com custom connectors, mcp-cli,
    # Cursor, Continue etc. drive synthetic-cohort generation.
    "mcp>=1.2",
]

[project.scripts]
syntha = "syntha.cli:main"
syntha-mcp = "syntha.mcp_server:main"

[tool.setuptools.package-data]
"syntha.bundled_models" = ["*.json"]

[tool.setuptools.packages.find]
where = ["src"]

[tool.ruff]
line-length = 100
target-version = "py310"
extend-exclude = ["app/src/model_*.json", "output/", "examples/sample_output/"]

[tool.ruff.lint]
select = ["E", "W", "F", "I", "B", "UP", "C4", "SIM"]
ignore = [
    "E501",   # line-too-long — we use 100 but allow some leniency
    "B008",   # function calls in argument defaults (click decorators)
    "SIM108", # ternary suggestion can hurt readability
]

[tool.ruff.lint.per-file-ignores]
"tests/*"   = ["E501", "B011", "B017"]
"scripts/*" = ["E501"]

[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "-q --tb=short"
filterwarnings = [
    "ignore::DeprecationWarning",
]