CI: Update cibuildwheel, drop support for python 3.8 and 3.9 #656

	name: ci-pytest

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main
	workflow_dispatch:

	env:
	# Updates or changes to this, or the runner OS or arch will invalidate the cache
	python_version: "3.12" # Python version to use for testing - update when needed

	jobs:
	test:
	runs-on: ubuntu-22.04
	# Default shell needs to be bash for conda
	# https://github.com/conda-incubator/setup-miniconda?tab=readme-ov-file#important
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- name: Setup Miniconda
	uses: conda-incubator/setup-miniconda@8ee1f361103df19b6f8c8655fd3967a8ecb162d5
	with:
	channels: conda-forge
	conda-remove-defaults: true
	miniforge-version: latest
	python-version: ${{ env.python_version }}
	auto-update-conda: true
	activate-environment: antspy-env

	- name: Checkout code
	uses: actions/checkout@v6
	with:
	path: antspy-pr

	- name: Install dependencies and ANTsPy from PR
	run: \|
	conda info
	which python
	python --version
	python -m pip --version

	conda install -y coverage pip setuptools wheel packaging
	python -m pip install --upgrade pip setuptools wheel 'packaging>=24'

	python -m pip install SimpleITK nibabel
	python -m pip install ./antspy-pr

	python -c "import sys, packaging; print(sys.executable); print(packaging.__version__, packaging.__file__)"
	conda list

	- name: Run tests
	run: \|
	conda activate antspy-env
	bash antspy-pr/tests/run_tests.sh -c

	- name: Coveralls
	uses: coverallsapp/github-action@v2
	with:
	files: antspy-pr/tests/coverage.xml

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