21cmEMU/pyproject.toml at main · 21cmfast/21cmEMU · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
[project]
name = "py21cmEMU"
dynamic = ["version"]
description = "Emulator of 21cmFAST summaries."
authors = [
    { name = "Daniela Breitman", email = "daniela.breitman@sns.it" }
]
license = { text = "MIT" }
readme = "README.md"
requires-python = ">=3.10"
classifiers = [
    "Development Status :: 5 - Production/Stable",
    "License :: OSI Approved :: MIT License",
    "Operating System :: Unix",
    "Operating System :: POSIX",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Programming Language :: Python :: 3.13",
    "Programming Language :: Python :: 3.14",
]
keywords = [
    "Epoch of Reionization",
    "Cosmology",
]
dependencies = [
    "numpy>=1.22.0",
    "scipy>=1.10.1",
    "torch>=1.9.0",
    "einops>=0.6.0",
    "appdirs>=1.4.4",
    "toml>=0.10.2",
    "GitPython>=3.1.31",
    "astropy>=5.0",
    "tqdm>=4.0.0",
]

[dependency-groups]
test = [
    "coverage[toml]>=6.2",
    "h5py>=3.8.0",
    "Pygments>=2.10.0",
    "pytest>=6.2.5",
    "pytest-socket",
    "typeguard>=2.13.3",
    "xdoctest[colors]>=0.15.10",
]
docs = [
    "furo>=2021.11.12",
    "ipython>=7.0.0",
    "myst-parser>=0.16.1",
    "nbsphinx>=0.9.0",
    "sphinx>=4.3.2",
    "sphinx-autobuild>=2021.3.14",
    "sphinx-click>=3.0.2",
]
dev = [
    "mypy>=0.930",
    "pre-commit>=2.16.0",
    "pre-commit-hooks>=4.1.0",
    "pytest-cov>=7.1.0",
    "pyupgrade>=2.29.1",
    "ruff>=0.15.11",
    { include-group = "test" },
    { include-group = "docs" },
]

[project.urls]
Homepage = "https://github.com/21cmFAST/21cmEMU"
Repository = "https://github.com/21cmFAST/21cmEMU"
Documentation = "https://21cmEMU.readthedocs.io"
Changelog = "https://github.com/21cmFAST/21cmEMU/releases"

[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"

[tool.hatch.version]
source = "vcs"

[tool.hatch.version.raw-options]
tag_regex = "^v(?P<version>[0-9]+\\.[0-9]+\\.[0-9]+)$"

[tool.hatch.build.targets.wheel]
packages = ["src/py21cmemu"]

[tool.hatch.build.targets.sdist]
exclude = ["docs/tutorials/**/*.h5"]

[tool.coverage.paths]
source = ["src", "*/site-packages"]
tests = ["tests", "*/tests"]

[tool.coverage.run]
branch = true
source = ["py21cmemu"]

[tool.coverage.report]
show_missing = true

[tool.ruff]
line-length = 88
target-version = "py310"

[tool.ruff.lint]
select = [
    "E",    # pycodestyle errors
    "W",    # pycodestyle warnings
    "F",    # pyflakes
    "I",    # isort
    "B",    # flake8-bugbear
    "C90",  # McCabe complexity
    "UP",   # pyupgrade
    "RUF",  # ruff-specific rules
]
ignore = [
    "E501",    # line too long (handled by formatter)
    "RUF002",  # ambiguous unicode in docstrings (legitimate math: ×, –)
    "RUF003",  # ambiguous unicode in comments  (legitimate math: ×, –)
    "C901",    # function complexity (inherently complex model/loader functions)
]

[tool.ruff.format]
quote-style = "double"
indent-style = "space"

[tool.mypy]
strict = true
warn_unreachable = true
pretty = true
show_column_numbers = true
show_error_codes = true
show_error_context = true

[tool.pytest.ini_options]
testpaths = ["tests"]
markers = [
    "slow: marks tests as slow (deselect with '-m \"not slow\"')",
    "main_only: marks tests to only run in CI or with --run-slow",
]

[tool.ruff.lint.per-file-ignores]
"*.ipynb" = ["E402"]  # Allow imports after matplotlib setup in notebooks
"tests/*" = ["B"]     # Relax bugbear in tests
"src/py21cmemu/models/ACG/convert_v1_to_pytorch.py" = ["ALL"]  # bookkeeping script, not part of the package